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SRX5980181: 16S V4 rRNA Hirudo verbana : Intaluminal fluid
1 ILLUMINA (Illumina MiSeq) run: 7,057 spots, 3.5M bases, 2.3Mb downloads

Design: Amplified the V4 hypervariable region of the 16S ribosomal RNA (rRNA) gene using primers designed in (Kozich, 2013). PCR reactions were prepared in triplicate and sequenced using an Ilumina MiSeq with custom sequencing primers added to the reagent cartridge and sequenced 2 250bp
Submitted by: University of Connecticut
Study: Microbiome 16S v4 rRNA deep sequencing data from Macrobdella decora and Hirudo verbana Raw sequence reads
show Abstracthide Abstract
Building evidence implicates the gut microbiome in regulating animal digestion, nutritional acquisition, immune regulation, development, and even mood regulation. Because of the difficulty of assigning causative relationships in complex gut microbiomes a simplified model for testing hypotheses is necessary. Previous research in Hirudo verbana has suggested this animal as a highly simplified and tractable animal model. Our data show that Macrobdella decora may work just as well as H. verbana without the drawback of being an endangered organism and with the added convenience of easy access to field-caught specimens. The similarity of the microbial community structure of species from two different continents reveals the highly-conserved nature of the microbial symbionts in sanguivorous leeches and confirms the medicinal leech as a highly simplified, natural animal model in which to study gut symbioses.
Sample:
SAMN11961100 • SRS4885817 • All experiments • All runs
Library:
Name: MdMA0dF040618EMeBD
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 7,057 spots, 3.5M bases, 2.3Mb
Run# of Spots# of BasesSizePublished
SRR92090777,0573.5M2.3Mb2020-06-01

ID:
8016487

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